PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G418600.1
Common NameB456_009G418600, LOC105768117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 466aa    MW: 50637.1 Da    PI: 10.2064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G418600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056284123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.009G418600.1 62 FICEICNKGFQRDQNLQLHRRGH 84
                        89*******************88 PP

2zf-C2H212.90.00034139161123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.009G418600.1 139 WKCEKCSKKYAVQSDWKAHSKTC 161
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-76184No hitNo description
PROSITE profilePS5015710.8456284IPR007087Zinc finger, C2H2
PfamPF121715.5E-56284IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355100104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-7134159No hitNo description
SMARTSM00355140139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSGDGFSLPV SIGGFVHQEQ NNTNPNPKSN PVKKKRNLPG NPDPDAEVIA LSPKTLMATN  60
RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRNNKEPVK KKVYICPEKT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARFSSV AGAATNLNFR NDVVNLPIGF GGIPQFGSGF TQDVSGMTVS  240
GLPEMVQIAS GNLFGSSSLN NFGTDSNPPL LQLPQGLKEE GGSKGKLMES LSPLYSDTQN  300
EQSKPAAPMS ATALLQKAAQ MGSTRSKPTS FFGNSFGVMS STSSQRSASL RSTQNRNGQL  360
QQIYPNVKQQ ESNLMASSSV SVSANAGLGT SNNFDRLILQ TGVKPNAPNQ LKMHPGSNSI  420
DQSLTRDFLG MGNDQSARPF LPQELAKFAS IGSNMGLNQF SSSNH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443323.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-148IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A0D2V1730.0A0A0D2V173_G
STRINGPOPTR_0006s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-112C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]